SHRAP

SHort Read Assembly Protocol

This picture has nothing to do with sequencing and assembly. It just looks cool.

Article

To read about SHRAP, visit PLoS ONE:

Whole-Genome Sequencing and Assembly with High-Throughput, Short-Read Technologies

You can leave comments there. Or, just download the PDF below:

SHRAP.pdf

You can download high-resolution versions of the figures below:

Figure 1, Figure 2, Figure 3, Figure 4, Figure 5, Figure 6, Figure 7, Figure 8

Errata:

Table 3: Sequence covered for Read length 100 at (7.5x, 1.5x) should be 67.6%, not 97.6%.

Discussion - Feasibility of the sequencing protocol, step 4: The number of reads per 454 sequencing plate should be approximately 400,000, not 250,000. Figure 4 corroborates this number.

Source code

The source code for the project is not suitable for production work - it is prototype code that was used for a proof of principle. If you would like to get the source code to learn from, please contact the authors.

Andreas Sundquist

email: asundqui [at] cs [dot] stanford [dot] edu

 

Serafim Batzoglou

email: serafim [at] cs [dot] stanford [dot] edu

To contact us: